1st training event

Paris

Training

Bioinformatics training

November 22nd until December 2nd

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Preparatory courses & Accounts

Before 22.11.2021

 

Introduction to UNIX

ORCID account

OSF account

Individual, personnal works

programmation informatique

Programs to be installed

Before 22.11.2021

Package SARtools

Anaconda (for jupyter)

Megan6

Notepad++ (or any serious text editor)

VirtualBox

R

Rstudio

Ubuntu

 Introductions to the Bioinformatics Training

TikTok 404 page_edited.jpg

22.11.2021

Introductions to the Bioinformatics Training

09:30 - 10:45 Installation Session&Troubleshooting

10:45 - 11:00 Coffee Break

11:00 - 11:30 Installation Session&Troubleshooting

11:30 - 13:00 Introduction to Snakemake

13:00 - 14:00 Lunch

14:00 - 15:00 E-MUSE project introduction

15:00 - 15:10 Coffee Break

15:10 - 16:00 Introduction to MSCA-ITN

16:00 - 16:30 ESRs representatives election

ISC-PIF,113 rue Nationale, 75013 Paris 

R_2.PNG

23.11.2021

1st day of Consortium Meetings

10:00 - 12:00 Preparatory courses: Introduction to R and R studio

IJM Université Paris Diderot/CNRS - Bâtiment Buffon, 15 rue Hélène Brion, 75205 Paris CEDEX 13 (salle 141 B)

Triangulum Galaxy_edited.jpg

24.11.2021

2nd day of Consortium Meetings

09:00 - 11:30 Preparatory courses: Introduction to R, R studio and Galaxy

IJM Université Paris Diderot/CNRS - Bâtiment Buffon, 15 rue Hélène Brion, 75205 Paris CEDEX 13 (salle 141 B)

Image de National Cancer Institute

25.11.2021

Visit and sequencing

09:00 - 10:00  Transfer to Thiverval-Grignon
10:00 - 12:00  Analytical Platform, Microbiology and Molecular Biology laboratories visit
12:00 - 13:00    Transfer to ISC-PIF
13:00 - 14:00    Lunch
14:00 - 15:30    Sequencing
15:30 - 15:40    Coffee Break
15:40 - 17:00    Introduction to R

Thiverval-Grignon (morning)

ISC-PIF,113 rue Nationale, 75013 Paris (afternoon)

Image de CDC

26.11.2021

RNAseq Analysis

09:00 - 10:45    RNAseq Analysis
10:45 - 11:00    Coffee Break
11:00 - 13:00    RNA seq Analysis
13:00 - 14:00    Lunch
14:00 - 15:30    RNA seq Analysis
15:30 - 15:40    Coffee Break
15:40 - 17:00    RNA seq Analysis

ISC-PIF,113 rue Nationale, 75013 Paris

Image de National Cancer Institute

29.11.2021

Metagenomics

09:00 - 10:45    Metagenomics
10:45 - 11:00    Coffee Break
11:00 - 13:00    Metagenomics
13:00 - 14:00    Lunch
14:00 - 15:30    Metagenomics
15:30 - 15:40    Coffee Break
15:40 - 17:00    Metagenomics

ISC-PIF,113 rue Nationale, 75013 Paris

Image de National Cancer Institute

30.11.2021

Proteomics

09:00 - 10:45    FAIR Data
10:45 - 11:00    Coffee Break
11:00 - 13:00    FAIR Data
13:00 - 14:00    Lunch
14:00 - 15:30    Proteomics
15:30 - 15:40    Coffee Break
15:40 - 17:00    Proteomics

ISC-PIF,113 rue Nationale, 75013 Paris

Image de National Cancer Institute

01.12.2021

Metabolomics

09:00 - 10:45    Metabolomics
10:45 - 11:00    Coffee Break
10:45 - 13:00    Metabolomics
13:00 - 14:00    Lunch
14:00 - 15:30    Metabolomics
15:30 - 15:40    Coffee Break
15:40 - 17:00    Metabolomics

ISC-PIF,113 rue Nationale, 75013 Paris

Image de Firmbee.com

02.12.2021

PCA Clustering

09:00 - 10:45    PCA clustering
10:45 - 11:00    Coffee Break
10:45 - 13:00    PCA clustering
13:00 - 14:00    Lunch
14:00 - 15:30    Further clustering methods (e.g. PLS:DA, PLS correlation, PLS regression...) 
15:30 - 15:40    Coffee Break
15:40 - 17:00    Further clustering methods (e.g. PLS:DA, PLS correlation, PLS regression...) 

ISC-PIF,113 rue Nationale, 75013 Paris